Visualize Single Gene Univariable Cox Result from Toil Data Hub
Source:R/vis_pancan_value.R
vis_unicox_tree.Rd
Visualize Single Gene Univariable Cox Result from Toil Data Hub
Usage
vis_unicox_tree(
Gene = "TP53",
measure = "OS",
data_type = "mRNA",
threshold = 0.5,
values = c("grey", "#E31A1C", "#377DB8"),
opt_pancan = .opt_pancan
)
Arguments
- Gene
a molecular identifier (e.g., "TP53") or a formula specifying genomic signature (
"TP53 + 2 * KRAS - 1.3 * PTEN"
).- measure
a survival measure, e.g. "OS".
- data_type
choose gene profile type, including "mRNA","transcript","methylation","miRNA","protein","cnv"
- threshold
a expression cutoff,
0.5
for median.- values
the color to fill tumor or normal
- opt_pancan
specify one dataset for some molercular profiles