Visualize cross-omics of one gene in PCAWG
Usage
vis_pcawg_gene_cross_omics(
gene = "TP53",
tumor_projects = NULL,
n_promoter = 0,
add_mean_promoter = FALSE,
promoter_type = c("relative", "raw", "outlier"),
return_list = FALSE
)Arguments
- gene
a gene symbol identifier (e.g., "TP53")
- tumor_projects
Select specific PCAWG projects. Default NULL, indicating all.
- n_promoter
specific promoter identifiers or number of sampling.
- add_mean_promoter
whether to add median promoter activity.
- promoter_type
one of "relative", "raw", "outlier".
- return_list
TRUE returns a list including plot object and data. FALSE just returns plot.