Visualize cross-omics of one pathway among pan-cancers

Visualize cross-omics of one pathway among pan-cancers

Usage

vis_pathway_cross_omics(
  pw = "HALLMARK_ADIPOGENESIS",
  tumor_projects = NULL,
  tumor_samples = NULL,
  pval_mrna = c(0.05, 0.01, 0.001),
  return_list = FALSE
)

Arguments

pw

pathway name

tumor_projects

Select specific TCGA projects. Default NULL, indicating all TCGA projects.

tumor_samples

Select specific tumor samples. Default NULL, indicating all tumor samples.

pval_mrna

The P value thresholds

return_list

TRUE returns a list including plot object and data. FALSE just returns plot.

Value

funkyheatmap