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Visualize Single Gene Expression in Anatomy Location

Source: R/vis_pancan_value.R
vis_pancan_anatomy.Rd

Visualize Single Gene Expression in Anatomy Location

Usage

vis_pancan_anatomy(
  Gene = "TP53",
  Gender = c("Female", "Male"),
  data_type = "mRNA",
  option = "D",
  opt_pancan = .opt_pancan
)

Arguments

Gene

a molecular identifier (e.g., "TP53") or a formula specifying genomic signature ("TP53 + 2 * KRAS - 1.3 * PTEN").

Gender

a string, "Female" (default) or "Male".

data_type

choose gene profile type, including "mRNA","transcript","methylation","miRNA","protein","cnv"

option

A character string indicating the color map option to use. Eight options are available:

  • "magma" (or "A")

  • "inferno" (or "B")

  • "plasma" (or "C")

  • "viridis" (or "D")

  • "cividis" (or "E")

  • "rocket" (or "F")

  • "mako" (or "G")

  • "turbo" (or "H")

opt_pancan

specify one dataset for some molercular profiles

Value

a ggplot object