Visualize cross-omics of one gene among pan-cancers
Usage
vis_gene_cross_omics(
gene = "TP53",
tumor_projects = NULL,
tumor_samples = NULL,
n_trans = 5,
n_methy = 5,
seed = 42,
pval_mrna = c(0.05, 0.01, 0.001),
return_list = FALSE
)Arguments
- gene
a gene symbol identifier (e.g., "TP53")
- tumor_projects
Select specific TCGA projects. Default NULL, indicating all TCGA projects.
- tumor_samples
Select specific tumor samples. Default NULL, indicating all tumor samples.
- n_trans
The number of sampling transcripts or specific transcript identifiers.
- n_methy
The number of sampling CpG sites or specific CpG identifiers.
- seed
The seed of sampling.
- pval_mrna
The P value thresholds
- return_list
TRUE returns a list including plot object and data. FALSE just returns plot.