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Visualize CCLE Gene Expression

Source: R/vis_ccle_value.R
vis_ccle_tpm.Rd

Visualize CCLE Gene Expression

Usage

vis_ccle_tpm(
  Gene = "TP53",
  data_type = "mRNA",
  use_log = FALSE,
  opt_pancan = .opt_pancan
)

Arguments

Gene

a molecular identifier (e.g., "TP53") or a formula specifying genomic signature ("TP53 + 2 * KRAS - 1.3 * PTEN").

data_type

support genomic profile for CCLE, currently "mRNA", "protein","cnv" are supported

use_log

if TRUE, log values.

opt_pancan

specify one dataset for some molercular profiles

Value

a ggplot object