Run UCSC Xena Shiny App with specifc content

Usage

app_run2(
  runMode = "client",
  port = getOption("shiny.port"),
  content = c("a", "s", "q", "p", "d")
)

Arguments

runMode

default is 'client' for personal user, set it to 'server' for running on server.

port

The TCP port that the application should listen on. If the port is not specified, and the shiny.port option is set (with options(shiny.port = XX)), then that port will be used. Otherwise, use a random port between 3000:8000, excluding ports that are blocked by Google Chrome for being considered unsafe: 3659, 4045, 5060, 5061, 6000, 6566, 6665:6669 and 6697. Up to twenty random ports will be tried.

content

Modules to enable.

a: all modules
s: only loading basic modules;
q: add tpc (TCGA, PCAWG, CCLE) modules
p: add tpc pipelines
d: add pharmcogenomics modules

Examples

if (FALSE) { # \dontrun{
app_run2(content = "s")
} # }